BioMCP: Biomedical Model Context Protocol

Active

BioMCP is an open source (MIT License) toolkit that empowers AI assistants and agents with specialized biomedical knowledge. Built following the Model Context Protocol (MCP), it connects AI systems to authoritative biomedical data sources, enabling them to answer questions about clinical trials, scientific literature, and genomic variants with precision and depth.

Updated 8/8/2025
Key Features

What makes this MCP server special

Providing structured access to clinical trials
biomedical literature
and genomic variants
Enabling natural language queries to specialized databases without requiring knowledge of their specific syntax
Supporting biomedical research workflows through a consistent interface
Functioning as an MCP server for AI assistants and agents

Requirements

uv
Server Information

Status

Active

Version

1.0.0

License

MIT

Author

https://github.com/genomoncology

Installation Guide
Get started with this MCP server in minutes

1. Install the Package

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2. Configuration

{
  "mcpServers": {
    "biomcp": {
      "command": "uv",
      "args": [
        "run",
        "--with",
        "biomcp-python",
        "biomcp",
        "run"
      ]
    }
  }
}

3. Usage Example

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